07/06/2026
Another Gut-Brain Connection?
“Shall we play a game?”
Can you name the movie from 1983?
“Wouldn’t you prefer a good game of chess?” is another line from this movie.
Let’s talk chess and checkers. And we’ll talk about a Gut-Brain Connection you may not hear much about.
But first, let’s talk about why looking at human physiology and biochemistry is not like playing checkers. Checkers is a 2 dimensional game. Each time a person makes their move, there may be several possible moves for the opponent. But the number of possible moves is limited to the available spaces on the board and the number of pieces in play. Each player has 12 identical pieces that can only move diagonally on the board.
Chess, in its classical form, is also a 2 dimensional game and is played on a 8 x 8 grid, just like checkers. But each player has 8 identical pawns, 1 king, 1 queen, 2 bishops, 2 knights and 2 rooks. Each of these pieces has its own set of rules for moving on the board. The possible moves throughout the game are considerably more than in checkers.
I think of human physiology, the chemical reactions that drive the function of cellular organelles, as being more like 3-dimensional chess. We often think of one chemical doing ONE thing but the reality is that any given chemical can participate in multiple different chemical reactions in the body. How a chemical functions will depend on where it is and what else is occurring chemically in that location.
Take Butyrate for example.
That is, after all, what this essay is about.
Butyrate.
Butyrate is a short chain fatty acid that is found in mother’s milk - cow, human or other mammal. So we have a clue that this is an important nutrient. Later in life, the young mammal will have the Butyrate provided from another source. One source is some of the bacteria that live in the gut microbiome. But if that microbiome is not yet developed, or has been disrupted by antibiotics or toxins, Butyrate production can be compromised.
If Butyrate functions were like a game of checkers, the one thing it would do is provide fuel to the cells that line the intestine. That’s it.
If Butyrate functions were like a game of chess, Butyrate would provide fuel to the cells that line the intestine, and also act as an HDAC inhibitor which up-regulates some of our genes - allows the genes to be translated for the purpose of making proteins that have multiple functions in cells. In immune cells, this can favor genes that code for anti-inflammatory cytokines.
Butyrate may support a reduction in inflammation.
Siddiqui MT, Cresci GAM. The Immunomodulatory Functions of Butyrate. J Inflamm Res. 2021 Nov 18;14:6025-6041. doi: 10.2147/JIR.S300989. PMID: 34819742; PMCID: PMC8608412.
Butyrate is involved in Immune System regulation, including an effect on Mast Cells.
Corrêa RO, Castro PR, Moser R, Ferreira CM, Quesniaux VFJ, Vinolo MAR, Ryffel B. Butyrate: Connecting the gut-lung axis to the management of pulmonary disorders. Front Nutr. 2022 Oct 20;9:1011732. doi: 10.3389/fnut.2022.1011732. PMID: 36337621; PMCID: PMC9631819.
If Butyrate functions were like a game of 3-dimensional chess, it would provide fuel to the cells that line the intestine; also act as an HDAC inhibitor which up-regulates some of our genes; and as an HDAC inhibitor, up-regulates the CFTR gene which in turn, regulates the expression of additional genes. Butyrate can up-regulate production of CFTR cell membrane protein.
In cells that have CFTR in the cell membrane (this includes multiple types of cells, not just endothelial cells), the up-regulated production of CFTR cellular membrane protein can favor an increase in release of Glutathione into the extracellular fluids. The CFTR cell membrane protein also regulates other membrane proteins like the Epithelial Sodium Channel as well as regulating the expression of some mitochondrial genes.
(I write about this in the second book, Broken Body. References for these statements are in the book.)
What else can Butyrate do? Butyrate can be involved in nerve health. Remember that you have a big bundle of nerves in your head!
Chakraborty, Prapti; Laird, Angela S.*. Understanding activity of butyrate at a cellular level. Neural Regeneration Research 20(8):p 2323-2324, August 2025. | DOI: 10.4103/NRR.NRR-D-24-00468
But going back to how Butyrate is a fuel for the cells that line the intestines. Adequate fuel leads to healthier cells and healthier “tight junctions” that hold the sides of the cells together and helps prevent proteins from foods and from bacteria, “leaking” through the cellular barrier into the blood stream. A healthier gut lining can lead to less immune reactions to foods.
Adequate Butyrate can influence GI tract health (and support a healthier microbiome).
Adequate Butyrate can influence immune system balance.
Adequate Butyrate can have an effect on Mast Cells.
Adequate Butyrate can influence Glutathione availability.
Adequate Butyrate can influence nerve health.
So, let’s play Physiology Chess or 3-Dimensional Chess.
If we want to improve the health of the cells that line the GI tract, what is one option for this?
If we want to support a shift from pro-inflammatory immune response to anti-inflammatory immune response, what is one option for this?
I we want to help stabilize Mast Cells, what is one option for this?
If we want to improve availability of Glutathione, what is one option for this?
If we want to improve nerve (and brain - that big bundle of nerves in your head) health, what is one option for this?
The answer to each of those questions, at least one possible answer, is to improve availability of Butyrate.
Improving the health of the gut microbiome is a good step, but you may actually benefit from using supplemental Butyrate (from foods or supplements) to improve the health of the gut so that you can improve the health of the gut microbiome. A gut microbiome is not quickly restored by a pack of probiotics or a carton of yogurt. The environment of the gut microbiome must be prepared and tended for the microbes to flourish.
Butyrate is something that may benefit people who have chronic, inflammatory conditions.
I am not at an academic center or employed by a major medical center. I’m just a small town doc trying to do the best that I can for my patients.
You can learn more about the work that I do on my Patreon page (many posts are free to read) and from the books that I wrote for my patients.
I recommend reading the books in order. Books 1 and 2 are in the bookstore. Book 3 is still in the editing phase. Get started with Broken Brain and Broken Body and then you will be ready for Book 3, Breaking Free.
The links for the bookstore page and for my Patreon page are on my website.
betsyhendricksmd DOT com
I’ll put the link to my website in a comment.
NOTE: The information presented in this post (and all of my posts) is for informational use only. This information is not intended to diagnose or treat any condition and should not be taken as medical advice. If you have medical concerns, please discuss these with your healthcare provider.